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Installation and usage

Package Installation

You can install the package in any project with the following command :

  • launch julia with the command julia
  • enter the Julia package manager by typing ] in the REPL. (the REPL should turn in blue)
  • if you want to activate an environment, type : activate . (otherwise the package will be installed in the global environment)
  • In order to add our unregistered package, type add https://github.com/CRMSB/SEQ_BRUKER_a_MP2RAGE_CS_360
  • if you want to use the package in your script just add the following line : using SEQ_BRUKER_a_MP2RAGE_CS_360

How to use the package

Follow the example in the documentation

Steps :

  • Define the path to the bruker dataset
path_bruker = joinpath(datadir, "MP2RAGE_FULLY")
  • Perform the reconstruction 
d = reconstruction_MP2RAGE(path_bruker; mean_NR=true)
  • write the results in the qBIDS format
subject_name = "sub_01"
dir_path = "" # directory path where the files will be create
write_bids_MP2RAGE(d,subject_name,dir_path)