Unregistered package Installation

You can install the package in any project with the following command :

  • launch julia with the command julia
  • enter the Julia package manager by typing ] in the REPL. (the REPL should turn in blue)
  • if you want to activate an environment, type : activate . (otherwise the package will be installed in the global environment)
  • In order to add our unregistered package, type add https://github.com/CRMSB/PAPER_subspace_MESE
  • if you want to use the package : using Subspace_MESE

Reproducing figure 8

In order to reproduce figure 8, you need to :

  • compile the BART toolbox : https://mrirecon.github.io/bart/ (you can skip this step if you don't want to plot the BART reconstruction). After compilation/installation you can check the library path with which bart
  • download the dataset : https://zenodo.org/records/10610639 and extract the zip file.
  • download the current repository : git clone https://github.com/CRMSB/PAPER_subspace_MESE
  • Open a terminal and move to the docs folder in this repository
  • edit the script in docs/lit/example/subspace_julia_epg.jl and put the correct path in the variable
    • line 27 : path_raw should point to the bruker folder 10
    • line 30 : path_bart should point to the compiled bart library
  • launch julia in the docs folder with this command in the terminal: julia --project -t auto
  • run the literate example :
    using Pkg
Pkg.add(url="https://github.com/CRMSB/PAPER_subspace_MESE")
Pkg.instantiate()
include("lit/examples/subspace_julia_epg.jl")

The figure will be saved as fig_bart_julia.png in the docs folder.